PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000035.1_g00027.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 498aa    MW: 54229.8 Da    PI: 8.9855
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000035.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0592114123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k F r  nL+ H r H
  Itr_sc000035.1_g00027.1  92 FVCEICNKGFQRDQNLQLHRRGH 114
                              89*******************88 PP

2zf-C2H215.64.5e-05168190123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+ k H++t+
  Itr_sc000035.1_g00027.1 168 WKCDKCSKKYAVQSDWKAHQKTC 190
                              58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-591114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.62E-891114No hitNo description
PROSITE profilePS5015710.94992114IPR007087Zinc finger, C2H2
PfamPF121717.9E-592114IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01792114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM0035577133163IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-5156189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.62E-8163189No hitNo description
SMARTSM0035594168188IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSNITGEDGS FSSGNTGEEV HQQQQQQQQK HLQAPNSTPP ATVTPTNSNG STSQQQQQQP  60
PAKKKRNLPG TPDPNAEVVA LSPTTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL  120
RQRTTAEVRK RVYICPEPTC VHHNPARALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ  180
SDWKAHQKTC GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNKVNQAG GLMDPNNVNL  240
QPQIPELMSA NTAMGLSEFT NFDPKNPLKS LPQDLVPIPF KSINMAGAAG AGMFATSSGN  300
LFGSPRSIAT SSSGLQLSSN TPSPGFNGSS VVPMSATALL QKAAQMGATA SNSINSPMMQ  360
KSFTTSMAGT DHRTSTPPPY GALEQQSSIT PAFENFPTPP EGGFSAAMND IAIYTGMLMN  420
TTATPNEQNP PAEQNPMTVD FLGVGGSRPA AAGTSMHQQQ QQRLEMEAMN QQRMQAMSHP  480
AFHHQQHMLH GNSALWDV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565721.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-113IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A068U7D20.0A0A068U7D2_COFCA; Uncharacterized protein
STRINGSolyc09g074780.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-101C2H2-like zinc finger protein